BBKNN
Project home page here, tutorial notebook here.
Function docstrings
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Batch balanced KNN, altering the KNN procedure to identify each cell's top neighbours in each batch separately instead of the entire cell pool with no accounting for batch. |
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Perform ridge regression on scaled expression data, accepting both technical and biological categorical variables. |
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Scanpy-independent BBKNN variant that runs on a PCA matrix and list of per-cell batch assignments instead of an AnnData object. |